Database: IWGSC-v1.0
The clusters were got based on Non-redundant TR arrays, using
cdhit-est and
blastn.
1. For 1-10 bp TRs: the consensus patterns must 100% match, different variants (eg. AAT/ATA/ATT/TAA/TAT/TTA are all variants of AAT) were clustered together.
2. For others: under the parameters of pident ≥ 80 and qcovs ≥ 80, variants and multimers were clustered together.
- IWGSC-v1.0.1-10.xlsx 225K 2019-03-21 23:08:18
- IWGSC-v1.0.11-29.xlsx 4.7M 2019-03-21 23:08:18
- IWGSC-v1.0.30-2002.top.xlsx 391K 2019-03-21 23:08:15