B2DSC - Job status

Your job id is: t662ab059. 11 sequences were blasted against Triticum_aestivum-iwgsc_refseqv1_0 genome.

Note: Job will be stored only 7 days.

Blastn has done, we can filter the results now. Download

Best hit HSP

The table headers here are all specifiers of NCBI BLAST+ outfmt 6.

You can save the data here to a text file.

CCS1

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1A	100.00	90	100	plus	145355700	145355735	1e-10	66.2	72
chr1B	100.00	90	100	minus	91542654	91542619	1e-10	66.2	72
chr1D	97.50	100	100	plus	169298033	169298072	2e-11	68.0	74
chr2A	100.00	90	100	minus	297781900	297781865	1e-10	66.2	72
chr2B	100.00	90	100	minus	226595077	226595042	1e-10	66.2	72
chr2D	100.00	90	100	plus	90491549	90491584	1e-10	66.2	72
chr3A	100.00	95	100	minus	340294465	340294428	1e-11	69.8	76
chr3B	100.00	90	100	plus	336919721	336919756	1e-10	66.2	72
chr3D	100.00	90	100	minus	228237318	228237283	1e-10	66.2	72
chr4A	100.00	93	100	plus	289051544	289051580	4e-11	68.0	74
chr4B	97.50	100	100	minus	308469517	308469478	3e-11	68.0	74
chr4D	97.50	100	100	minus	132637924	132637885	3e-11	68.0	74
chr5A	100.00	90	100	minus	220822330	220822295	1e-10	66.2	72
chr5B	100.00	90	100	minus	43723181	43723146	1e-10	66.2	72
chr5D	100.00	93	100	plus	167186123	167186159	3e-11	68.0	74
chr6A	100.00	93	100	minus	288516600	288516564	3e-11	68.0	74
chr6B	100.00	90	100	minus	162699056	162699021	1e-10	66.2	72
chr6D	100.00	90	100	minus	201355656	201355621	8e-11	66.2	72
chr7A	100.00	90	100	minus	84800680	84800645	1e-10	66.2	72
chr7B	100.00	93	100	minus	282300832	282300796	4e-11	68.0	74
chr7D	97.50	100	100	plus	75132718	75132757	3e-11	68.0	74

GAA

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1A	100.00	100	100	plus	563839	563859	6e-04	42.1	21
chr1B	100.00	100	100	minus	352309	352289	7e-04	42.1	21
chr1D	100.00	100	100	minus	122220	122200	5e-04	42.1	21
chr2A	100.00	100	100	minus	173606	173586	8e-04	42.1	21
chr2B	100.00	100	100	plus	541162	541182	8e-04	42.1	21
chr2D	100.00	100	100	plus	61172	61192	7e-04	42.1	21
chr3A	100.00	100	100	minus	568586	568566	8e-04	42.1	21
chr3B	100.00	100	100	plus	208968	208988	9e-04	42.1	21
chr3D	100.00	100	100	plus	325932	325952	6e-04	42.1	21
chr4A	100.00	100	100	plus	630944	630964	8e-04	42.1	21
chr4B	100.00	100	100	plus	1095165	1095185	7e-04	42.1	21
chr4D	100.00	100	100	plus	466864	466884	5e-04	42.1	21
chr5A	100.00	100	100	plus	658911	658931	7e-04	42.1	21
chr5B	100.00	100	100	plus	50410	50430	7e-04	42.1	21
chr5D	100.00	100	100	plus	597840	597860	6e-04	42.1	21
chr6A	100.00	100	100	minus	433499	433479	6e-04	42.1	21
chr6B	100.00	100	100	minus	1051996	1051976	8e-04	42.1	21
chr6D	100.00	100	100	plus	61591	61611	5e-04	42.1	21
chr7A	100.00	100	100	plus	199794	199814	8e-04	42.1	21
chr7B	100.00	100	100	plus	51176	51196	8e-04	42.1	21
chr7D	100.00	100	100	minus	287241	287221	7e-04	42.1	21

Kust-cen-3-2

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1A	95.56	100	100	minus	20129073	20129029	9e-13	73.4	80
chr1B	91.11	100	100	plus	226518263	226518307	5e-10	64.4	70
chr1D	93.33	100	100	plus	152427425	152427469	3e-11	68.0	74
chr2A	95.56	100	100	minus	336388138	336388094	1e-12	73.4	80
chr2B	91.11	100	100	plus	121950188	121950232	6e-10	64.4	70
chr2D	95.56	100	100	minus	137828676	137828632	1e-12	73.4	80
chr3A	95.56	100	100	minus	308953768	308953724	1e-12	73.4	80
chr3B	93.18	98	100	plus	377132573	377132616	2e-10	66.2	72
chr3D	91.11	100	100	plus	121098933	121098977	5e-10	64.4	70
chr4A	95.56	100	100	plus	223645088	223645132	1e-12	73.4	80
chr4B	91.11	100	100	minus	334227373	334227329	5e-10	64.4	70
chr4D	93.33	100	100	plus	165784422	165784466	3e-11	68.0	74
chr5A	95.56	100	100	plus	247930156	247930200	1e-12	73.4	80
chr5B	93.33	100	100	plus	120362680	120362724	5e-11	68.0	74
chr5D	93.33	100	100	plus	126520557	126520601	4e-11	68.0	74
chr6A	95.56	100	100	plus	274909166	274909210	9e-13	73.4	80
chr6B	93.33	100	100	minus	416908354	416908310	5e-11	68.0	74
chr6D	93.33	100	100	plus	80119342	80119386	3e-11	68.0	74
chr7A	93.33	100	100	plus	269172693	269172737	5e-11	68.0	74
chr7B	93.33	100	100	minus	380718520	380718476	5e-11	68.0	74
chr7D	93.33	100	100	plus	311841590	311841634	4e-11	68.0	74

OligpDb12H-1

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1A	82.93	76	93	plus	556210496	556210535	0.027	39.2	42
chr1B	77.78	81	96	plus	368512866	368512910	1.3	33.7	36
chr1D	81.82	80	96	minus	136907922	136907879	0.006	41.0	44
chr2A	84.09	78	85	minus	133314647	133314604	0.010	41.0	44
chr2B	78.26	85	100	plus	311894438	311894483	0.035	39.2	42
chr2D	83.33	74	91	plus	406749868	406749908	0.029	39.2	42
chr3A	81.82	80	93	minus	76183520	76183477	0.009	41.0	44
chr3B	74.55	91	91	plus	55146564	55146618	0.13	37.4	40
chr3D	83.33	74	96	minus	278668746	278668706	0.028	39.2	42
chr4A	79.59	80	80	minus	94372725	94372677	0.009	41.0	44
chr4B	80.95	76	85	minus	176666003	176665962	0.10	37.4	40
chr4D	78.43	85	85	minus	192771776	192771727	0.023	39.2	42
chr5A	78.72	76	91	plus	315783100	315783146	0.11	37.4	40
chr5B	86.05	76	93	minus	165318295	165318253	7e-04	44.6	48
chr5D	82.50	74	93	plus	110648491	110648529	0.090	37.4	40
chr6A	84.09	80	91	plus	540156416	540156458	0.008	41.0	44
chr6B	81.82	100	100	minus	448068153	448068102	7e-04	44.6	48
chr6D	82.98	85	85	minus	307854923	307854878	0.002	42.8	46
chr7A	82.22	83	85	plus	537369107	537369149	0.032	39.2	42
chr7B	80.95	76	93	plus	213975420	213975461	0.12	37.4	40
chr7D	85.00	74	83	minus	147980079	147980041	0.002	42.8	46

OligpTa535-1

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1A	98.31	100	100	minus	18897426	18897368	3e-21	102	112
chr1B	89.83	100	100	plus	2386782	2386840	1e-14	80.6	88
chr1D	91.53	100	100	minus	3092010	3091952	7e-16	84.2	92
chr2A	98.28	98	100	minus	406697906	406697849	1e-20	100	110
chr2B	91.53	100	100	plus	602265272	602265330	1e-15	84.2	92
chr2D	93.22	100	100	plus	647310969	647311027	2e-17	89.7	98
chr3A	98.31	100	100	minus	567938794	567938736	4e-21	102	112
chr3B	100.00	100	100	plus	746047626	746047684	1e-22	107	118
chr3D	93.22	100	100	minus	182267531	182267473	2e-17	89.7	98
chr4A	93.22	100	100	plus	629181535	629181593	2e-17	89.7	98
chr4B	91.53	100	100	minus	631518777	631518719	9e-16	84.2	92
chr4D	91.38	98	100	plus	3357123	3357180	3e-15	82.4	90
chr5A	98.31	100	100	plus	508295062	508295120	4e-21	102	112
chr5B	91.53	100	100	minus	303422868	303422810	1e-15	84.2	92
chr5D	91.53	100	100	plus	21864176	21864234	8e-16	84.2	92
chr6A	96.61	100	100	plus	39981019	39981077	4e-20	98.7	108
chr6B	91.38	98	100	plus	696304211	696304268	4e-15	82.4	90
chr6D	91.53	100	100	minus	29220133	29220075	7e-16	84.2	92
chr7A	98.31	100	100	minus	706801663	706801605	4e-21	102	112
chr7B	91.53	100	100	minus	373635719	373635661	1e-15	84.2	92
chr7D	91.53	100	100	plus	9480261	9480319	9e-16	84.2	92

OligpTa535-2

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1A	100.00	100	100	plus	70064223	70064281	7e-23	107	118
chr1B	98.31	100	100	plus	31187436	31187494	4e-21	102	112
chr1D	100.00	100	100	minus	36041934	36041876	6e-23	107	118
chr2A	100.00	100	100	minus	23763488	23763430	1e-22	107	118
chr2B	98.31	100	100	minus	757816487	757816429	4e-21	102	112
chr2D	100.00	100	100	minus	58978241	58978183	8e-23	107	118
chr3A	100.00	100	100	minus	635577279	635577221	9e-23	107	118
chr3B	100.00	100	100	plus	746047344	746047402	1e-22	107	118
chr3D	100.00	100	100	minus	62701351	62701293	8e-23	107	118
chr4A	100.00	98	100	plus	80664771	80664828	3e-22	105	116
chr4B	93.22	100	100	plus	561621548	561621604	3e-16	86.0	94
chr4D	100.00	100	100	minus	5193727	5193669	6e-23	107	118
chr5A	100.00	100	100	minus	505310309	505310251	9e-23	107	118
chr5B	96.36	93	100	minus	646059147	646059093	7e-18	91.5	100
chr5D	100.00	100	100	minus	37759731	37759673	7e-23	107	118
chr6A	100.00	98	100	plus	13196203	13196260	3e-22	105	116
chr6B	94.92	100	100	minus	707774689	707774632	2e-17	89.7	98
chr6D	100.00	100	100	minus	18631702	18631644	6e-23	107	118
chr7A	100.00	100	100	minus	74071873	74071815	9e-23	107	118
chr7B	98.25	97	100	plus	152247	152303	5e-20	98.7	108
chr7D	100.00	100	100	plus	39524793	39524851	8e-23	107	118

pAs1-1

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1A	100.00	100	100	plus	215138355	215138413	7e-23	107	118
chr1B	100.00	100	100	plus	10483840	10483898	8e-23	107	118
chr1D	100.00	100	100	plus	1316770	1316828	6e-23	107	118
chr2A	100.00	100	100	plus	1580612	1580670	1e-22	107	118
chr2B	100.00	100	100	minus	12102551	12102493	1e-22	107	118
chr2D	100.00	100	100	minus	375538	375480	8e-23	107	118
chr3A	100.00	100	100	minus	688504124	688504066	9e-23	107	118
chr3B	100.00	100	100	minus	21080769	21080711	1e-22	107	118
chr3D	100.00	100	100	minus	3208352	3208294	8e-23	107	118
chr4A	100.00	100	100	minus	644290175	644290117	9e-23	107	118
chr4B	100.00	100	100	minus	533117084	533117026	8e-23	107	118
chr4D	100.00	100	100	minus	3670103	3670045	6e-23	107	118
chr5A	100.00	100	100	plus	455955639	455955697	9e-23	107	118
chr5B	100.00	100	100	minus	30273320	30273262	9e-23	107	118
chr5D	100.00	100	100	minus	1624455	1624397	7e-23	107	118
chr6A	100.00	100	100	plus	114468699	114468757	8e-23	107	118
chr6B	100.00	100	100	minus	19288939	19288881	9e-23	107	118
chr6D	100.00	100	100	plus	2644976	2645034	6e-23	107	118
chr7A	100.00	100	100	minus	86867050	86866992	9e-23	107	118
chr7B	100.00	100	100	minus	67924257	67924199	9e-23	107	118
chr7D	100.00	100	100	plus	1577956	1578014	8e-23	107	118

pAs1-2

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1A	98.25	100	100	minus	37540051	37539995	4e-20	98.7	108
chr1B	98.25	100	100	minus	24945904	24945848	4e-20	98.7	108
chr1D	100.00	100	100	minus	323108747	323108691	7e-22	104	114
chr2A	98.25	100	100	plus	1580396	1580452	5e-20	98.7	108
chr2B	98.25	100	100	minus	37510237	37510181	5e-20	98.7	108
chr2D	100.00	100	100	minus	52449430	52449374	9e-22	104	114
chr3A	98.25	100	100	plus	14664607	14664663	4e-20	98.7	108
chr3B	98.25	100	100	minus	27846508	27846452	5e-20	98.7	108
chr3D	100.00	100	100	plus	32201848	32201904	9e-22	104	114
chr4A	98.25	100	100	plus	643117011	643117067	4e-20	98.7	108
chr4B	98.25	100	100	plus	365270965	365271021	4e-20	98.7	108
chr4D	100.00	100	100	minus	202746077	202746021	7e-22	104	114
chr5A	98.21	98	100	minus	417260206	417260151	1e-19	96.9	106
chr5B	98.25	100	100	minus	427193148	427193092	4e-20	98.7	108
chr5D	100.00	100	100	plus	417852516	417852572	8e-22	104	114
chr6A	98.25	100	100	minus	753637	753581	4e-20	98.7	108
chr6B	98.25	100	100	plus	66937725	66937781	4e-20	98.7	108
chr6D	100.00	100	100	plus	384876235	384876291	7e-22	104	114
chr7A	98.25	100	100	minus	10813978	10813922	4e-20	98.7	108
chr7B	98.25	100	100	minus	60191335	60191279	4e-20	98.7	108
chr7D	100.00	100	100	minus	49733442	49733386	9e-22	104	114

pSc119.2-1

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1A	78.38	82	82	plus	8378620	8378656	2.7	31.9	34
chr1B	93.33	100	100	minus	685312681	685312637	4e-11	68.0	74
chr1D	92.86	93	100	plus	495452098	495452139	1e-09	62.6	68
chr2B	91.11	100	100	plus	200857	200901	6e-10	64.4	70
chr2D	90.48	93	100	plus	11140633	11140674	2e-08	59.0	64
chr3A	90.24	91	100	minus	14540479	14540439	9e-08	57.2	62
chr3B	93.33	100	100	minus	1857943	1857899	5e-11	68.0	74
chr3D	88.89	100	100	minus	613233588	613233544	2e-08	59.0	64
chr4A	94.59	82	91	plus	744551711	744551747	2e-08	59.0	64
chr4B	95.56	100	100	minus	12932580	12932536	1e-12	73.4	80
chr4D	92.68	91	100	minus	350571	350531	5e-09	60.8	66
chr5A	93.33	100	100	minus	278667438	278667394	5e-11	68.0	74
chr5B	95.56	100	100	minus	4762033	4761989	1e-12	73.4	80
chr5D	91.11	100	100	plus	285463315	285463359	4e-10	64.4	70
chr6A	92.68	91	100	plus	141449747	141449787	6e-09	60.8	66
chr6B	93.33	100	100	minus	719167597	719167553	5e-11	68.0	74
chr6D	91.11	100	100	minus	473592399	473592355	4e-10	64.4	70
chr7A	88.89	100	100	plus	710290838	710290882	2e-08	59.0	64
chr7B	88.89	100	100	plus	66985098	66985142	2e-08	59.0	64

pSc119.2-2

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1B	93.33	100	100	plus	1593435	1593479	4e-11	68.0	74
chr1D	91.11	100	100	plus	495450042	495450086	4e-10	64.4	70
chr2B	95.56	100	100	minus	9299334	9299290	1e-12	73.4	80
chr2D	95.56	100	100	plus	363651	363695	1e-12	73.4	80
chr3A	91.11	100	100	minus	14540083	14540039	6e-10	64.4	70
chr3B	95.56	100	100	minus	550569	550525	1e-12	73.4	80
chr3D	88.89	100	100	plus	7016529	7016573	2e-08	59.0	64
chr4A	80.00	100	100	plus	744588025	744588069	0.007	41.0	44
chr4B	97.78	100	100	plus	13621700	13621744	8e-14	77.0	84
chr4D	88.89	100	100	minus	337841	337797	2e-08	59.0	64
chr5A	88.64	98	100	minus	278694122	278694079	8e-08	57.2	62
chr5B	95.56	100	100	minus	1079042	1078998	1e-12	73.4	80
chr5D	95.56	100	100	plus	285463593	285463637	9e-13	73.4	80
chr6A	84.09	98	100	plus	141449322	141449365	4e-05	48.2	52
chr6B	95.56	100	100	minus	719539647	719539603	1e-12	73.4	80
chr6D	93.33	100	100	plus	473562404	473562448	3e-11	68.0	74
chr7A	88.89	100	100	minus	112273	112229	2e-08	59.0	64
chr7B	88.89	100	100	plus	60608210	60608254	2e-08	59.0	64

pTa71-2

sseqid	pident	qcovhsp	qcovs	sstrand	sstart	send	evalue	bitscore	score
chr1A	100.00	100	100	plus	24439500	24439532	2e-09	60.8	66
chr1B	100.00	100	100	minus	80687840	80687808	3e-09	60.8	66
chr2A	100.00	100	100	minus	500445679	500445647	3e-09	60.8	66
chr2B	90.91	100	100	minus	448243346	448243314	7e-05	46.4	50
chr3A	100.00	100	100	minus	335401120	335401088	3e-09	60.8	66
chr3B	100.00	100	100	minus	39712407	39712375	3e-09	60.8	66
chr3D	96.30	82	82	plus	255226580	255226606	2e-04	44.6	48
chr4B	96.88	97	100	plus	456147683	456147714	4e-07	53.6	58
chr5A	100.00	100	100	plus	528403934	528403966	3e-09	60.8	66
chr5B	96.97	100	100	plus	68932840	68932872	1e-07	55.4	60
chr5D	96.00	76	82	plus	18586044	18586068	0.002	41.0	44
chr6B	100.00	100	100	minus	111697285	111697253	3e-09	60.8	66
chr7B	100.00	100	100	plus	3889564	3889596	3e-09	60.8	66
chr7D	96.30	82	100	minus	74038130	74038104	2e-04	44.6	48

Parameters used to filter blast results:

pident = 85, qcovhsp = 80, Sequence(s) just filtered = All of them

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Size: Image margins top px bottom px left px right px; px per Mbp px; Legend left px tick-length px length px width px; Ruler left px right px tick-length px; Each chromosome left px right px width px cap radius px; Between genomes px; Font size tick label px Mbp px chromosome name px; Bars width px (0 means will not plot bars.); Bar to chromosome width px
Offset: Legend tick label x px y em; Ruler tick label x px y em; Mbp y em; Chromosome name y em
Color: Color theme Black White; Bg/Fg Background Foreground; Chromosome fill border; Lower limit HSP per Mbp Value < 0 will not be plot.; Upper limit HSP per Mbp Value ≥ 100 will in this color.; Gradient steps
Plot bars of reference sequence: Id: CCS1; Description: Oligo-CCS1; Centromeric satellite repeats Cereal centromeric sequence; Sequence: CCGTTTGATAGAGGCAAAGGTGTCCCGTCTTTTGATGAGA; pident = 85, qcovehsp = 80; Color

Note:

Mouseover barcodes and bars to get information.

Coordinates

Note:

Click rectangulars with less than 100 repeats will show sequences.
Mouseover rectangulars will show start and end.

Parameters you set for blastn against chromosome sequences.

Parameter	Value
Species	Triticum_aestivum-iwgsc_refseqv1_0
Chromosomes	1A,2A,3A,4A,5A,6A,7A,1B,2B,3B,4B,5B,6B,7B,1D,2D,3D,4D,5D,6D,7D
perc_identity	70
qcov_hsp_perc	70
evalue	10
evalue-short	1000
word_size	11
word_size-short	7